Hao Ye, Guangyu Luo , Jia Liu, Jie Cao, Qilong Ma, Mengnan Xiao,Junbiao Dai.Decoding genetic diversity through genome engineering in bryophytes. Plant J, 2025 Mar.doi:10.1093/nsr/nwae469

Zhouqing Luo, Junbiao Dai.Strategic codon selection for enhanced genetic code expansion. Sci China Life Sci, 2025 Mar.doi:10.1007/s11427-024-2758-2

Li Cheng, Jielin Li, Yaojun Chen, Junbiao Dai.SCRaMbLE: a versatile tool for genome manipulation. Physiology (Bethesda), 2025 Feb.doi:10.1152/physiol.00049.2024

Chunmin Qiu, Guoqiang Wu, Puying Zhao, Junbiao Dai, Qian Luo, Liqing Zhao, Guobin Mao, Yingxin Ma.Intrinsic dual-emitting Si dots for high-precision and broad-range pH detection. Anal Chim Acta, 2025 Feb.doi:10.1016/j.aca.2025.343637

Guobin Mao, Yuan Zeng, Chunmin Qiu, Guangmiao Ding, Leyao Li, Lixin Ma, Junbiao Dai, Wen Yin, Yingxin Ma.Ratiometric fluorescent paper chip for monitoring the freshness of high protein foods. Anal Chim Acta, 2025 Jan.doi:10.1016/j.aca.2024.343418

Xiaoluo Huang, Zhaohua Hou, Wei Qiang, Honglei Wang, Xiangxiang Wang, Xiaoxu Chen, Xin Hu,  Junbiao Dai, Lingjun Li, Guanghou Zhao. Towards next-generation DNA encryption via an expanded genetic system . Natl Sci Rev , 2024 Dec . doi: 10.1093/nsr/nwae469

Chun Zhou, Yun Wang, Yikun Huang, Yongpan An, Xian Fu, Daqian Yang, Yilin Wang, Jintao Zhang, Leslie A Mitchell, Joel S Bader, Yizhi Cai, Junbiao Dai, Jef D Boeke, Zhiming Cai, Zhengwei Xie, Yue Shen, Weiren Huang. The de novo design and synthesis of yeast chromosome XIII facilitates investigations on aging . Nat Commun , 2024 Nov . doi: 10.1038/s41467-024-54130-3

Joshua S James,  Junbiao Dai, Wei Leong Chew, Yizhi Cai. The design and engineering of synthetic genomes . Nat Rev Genet , 2024 Nov . doi: 10.1038/s41576-024-00786-y

Guobin Mao, Qiaoyu Li, Ziying Zhang, Wei Huang, Qian Luo,  Junbiao Dai, Weiren Huang, Yingxin Ma. Analyte-induced hindrance in the RCA-assisted CRISPR/Cas12a system for homogeneous protein assays . Anal Chim Acta , 2024 Nov . doi: 10.1016/j.aca.2024.343294

Hao Ye, Guangyu Luo, Zhenwu Zheng, Xiaofang Li, Jie Cao, Jia Liu,  Junbiao Dai. Plant synthetic genomics: Big lessons from the little yeast . Cell Chem Biol , 2024 Oct . doi: 10.1016/j.chembiol.2024.08.001

Rui Zhang, Peiyu Shi, Shuyang Xu, Zhe Ming, Zicong Liu, Yuanyuan He,  Junbiao Dai, Erika Matunis, Jin Xu, Qing Ma. Soma-germline communication drives sex maintenance in the Drosophila testis . Natl Sci Rev , 2024 Jun . doi: 10.1093/nsr/nwae215

Fei Du,  Junbiao Dai, Yuling Jiao. Insights into a functional synthetic plant genome . New Phytol , 2024 Oct . doi: 10.1111/nph.19979

Yunyun Gao, Kai Peng, Defeng Bai, Xiao-Ye Bai, Yujing Bi, Anqi Chen, Baodong Chen, Feng Chen, Juan Chen, Lei Chen, Tong Chen, Wei Chen, Xu Cheng, Yanfen Cheng, Jie Cui, Jingjing Dai,  Junbiao Dai, Zhaolai Dai, Ye Deng, Yi-Zhen Deng, Wei Ding, Zhencheng Fang, Wei Fu, Hanbing Gao, Shaohua Gu, Xue Guo, Xuguang Guo, Dongfei Han, Lele He, Yatao He, Hui-Yu Hou, Baolei Jia, Gengjie Jia, Shuo Jiao, Wei Jin, Feng Ju, Zhicheng Ju, Siyuan Kong, Canhui Lan, Bing Li, Da Li, Diyan Li, Jingdi Li, Meng Li, Qi Li, Qiang Li, Wen-Jun Li, Xiaofang Li, Xuemeng Li, Yahui Li, You-Gui Li, Zhibin Liang, Ning Ling, Fufeng Liu, Qing Liu, Shuang-Jiang Liu, Hongye Lu, Qi Lu, Guangwen Luo, Hao Luo, Yuheng Luo, Hujie Lyu, Chuang Ma, Liyuan Ma, Tengfei Ma, Jinfeng Ni, Ziqin Pang, Xiaojing Qiang, Yuan Qin, Qingyue Qu, Chao Ran, Shuqiang Ren, Haitao Shang, Luyang Song, Linyang Sun, Weimin Sun, Liping Tang, Jian Tian, Kai Wang, Mengzhi Wang, Ming-Ke Wang, Tao Wang, Xiao-Yan Wang, Yao Wang, Yiwen Wang, Youshan Wang, Hailei Wei, Hong Wei, Zhong Wei, Tao Wen, Jiqiu Wu, Linhuan Wu, Linkun Wu, Jiao Xi, Bo Xie, Guofang Xu, Jun Xu, Shanshan Xu, Qing Xue, Liping Yan, Haifei Yang, Jun Yang, Junbo Yang, Ruifu Yang, Yalin Yang, Ying-Jie Yang, Xiaofang Yao, Yanpo Yao, Salsabeel Yousuf, Ke Yu, Zhengrong Yuan, Zhilin Yuan, Dong Zhang, Tianyuan Zhang, Weipeng Zhang, Yunzeng Zhang, Zhaonan Zhang, Zhen Zhang, Zhi-Feng Zhang, Shengguo Zhao, Wei Zhao, Maosheng Zheng, Ziqiang Zheng, Xin Zhou, Yuanping Zhou, Zhigang Zhou, Mo Zhu, Yong-Guan Zhu, Haiyan Chu, Yang Bai, Yong-Xin Liu. The Microbiome Protocols eBook initiative: Building a bridge to microbiome research . Imeta , 2024 Mar . doi: 10.1002/imt2.182

Xiaoluo Huang, Junting Cui, Wei Qiang, Jianwen Ye, Yu Wang, Xinying Xie, Yuanzhen Li,  Junbiao Dai. Storage-D: A user-friendly platform that enables practical and personalized DNA data storage . Imeta , 2024 Jan . doi: 10.1002/imt2.168

Guangyu Luo, Hao Ye, Mengxuan Xu, Xiaofang Li, Jianxuan Zhu,  Junbiao Dai. PpFab: An efficient promoter toolkit in Physcomitrium Patens . Plant Physiol , 2024 Sep . doi: 10.1093/plphys/kiae332

Wenfei Yu, Shuo Zhang, Shijun Zhao, Lian-Ge Chen, Jie Cao, Hao Ye, Jianbin Yan, Qiao Zhao, Beixin Mo, Ying Wang, Yuling Jiao, Yingxin Ma, Xiaoluo Huang, Wenfeng Qian,  Junbiao Dai. Designing a synthetic moss genome using GenoDesigner . Nat Plants , 2024 Jun . doi: 10.1038/s41477-024-01693-0

Abdur Rasool, Jingwei Hong, Zhiling Hong, Yuanzhen Li, Chao Zou, Hui Chen, Qiang Qu, Yang Wang, Qingshan Jiang, Xiaoluo Huang,  Junbiao Dai. An Effective DNA-Based File Storage System for Practical Archiving and Retrieval of Medical MRI Data . Small Methods , 2024 Oct . doi: 10.1002/smtd.202301585

Guoqiang Wu, Qiaoyu Li,  Junbiao Dai, Guobin Mao, Yingxin Ma. Design and Application of Biosafe Coronavirus Engineering Systems without Virulence . Viruses , 2024 Apr . doi: 10.3390/v16050659

Wen Yin, Leyao Li, Yang Yang, Yuxin Yang, Ruijing Liang, Lixin Ma,  Junbiao Dai, Guobin Mao, Yingxin Ma. Ultra-Sensitive Detection of the SARS-CoV-2 Nucleocapsid Protein via a Clustered Regularly Interspaced Short Palindromic Repeat/Cas12a-Mediated Immunoassay . ACS Sens , 2024 Jun . doi: 10.1021/acssensors.4c00432

Yuge Feng, Cong Su, Guobin Mao, Baoting Sun, Yizhi Cai, Junbiao Dai*, Yingxin Ma*. When synthetic biology meets medicine . Life Medicine , 2024 Mar . doi: 10.1093/lifemedi/lnae010

Runtao Zhu, Jiao Zhang, Lin Wang, Yunfeng Zhang, Yang Zhao, Ying Han, Jing Sun, Xi Zhang, Ying Dou, Huaxiong Yao, Wei Yan, Xiaozhou Luo, Junbiao Dai, Zhuojun Dai*. Engineering functional materials through bacteria-assisted living grafting . Cell Syst , 2024 Mar . doi: 10.1016/j.cels.2024.02.003

Zhaohua Hou*, Wei Qiang, Xiangxiang Wang, Xiaoxu Chen, Xin Hu, Xuye Han, Wenlu Shen, Bing Zhang, Peng Xing, Wenping Shi, Junbiao Dai*, Xiaoluo Huang*, Guanghou Zhao*. "Cell Disk" DNA Storage System Capable of Random Reading and Rewriting . Adv Sci (Weinh) , 2024 Feb . doi: 10.1002/advs.202305921

Shuangying Jiang*, Zelin Cai, Yun Wang, Cheng Zeng, Jiaying Zhang, Wenfei Yu, Chenghao Su, Shijun Zhao, Ying Chen, Yue Shen, Yingxin Ma, Yizhi Cai*, Junbiao Dai*. High plasticity of ribosomal DNA organization in budding yeast . Cell Rep , 2024 Feb . doi: 10.1016/j.celrep.2024.113742

Guiqi Bi, Shijun Zhao, Jiawei Yao, Huan Wang, Mengkai Zhao, Yuanyuan Sun, Xueren Hou, Fabian B Haas, Deepti Varshney, Michael Prigge, Stefan A Rensing, Yuling Jiao, Yingxin Ma, Jianbin Yan*, Junbiao Dai*. Near telomere-to-telomere genome of the model plant Physcomitrium patens . Nat Plants , 2024 Jan . doi: 10.1038/s41477-023-01614-7

Lian-Ge Chen, Tianlong Lan, Shuo Zhang, Mengkai Zhao, Guangyu Luo, Yi Gao, Yuliang Zhang, Qingwei Du , Houze Lu, Bimeng Li, Bingke Jiao, Zhangli Hu, Yingxin Ma, Qiao Zhao, Ying Wang*, Wenfeng Qian*, Junbiao Dai*, Yuling Jiao*. A designer synthetic chromosome fragment functions in moss . Nat Plants , 2024 Jan . doi: 10.1038/s41477-023-01595-7

Li Cheng, Shijun Zhao, Tianyi Li, Sha Hou, Zhouqing Luo, Jinsheng Xu, Wenfei Yu, Shuangying Jiang, Marco Monti, Daniel Schindler, Weimin Zhang, Chunhui Hou, Yingxin Ma, Yizhi Cai, Jef D Boeke, Junbiao Dai*. Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae . Nat Commun , 2024 Jan . doi: 10.1038/s41467-023-44511-5

Yao Yu , Qiaoyu Li, Wen Shi , Yuxin Yang, Hongpeng He, Junbiao Dai, Guobin Mao*, Yingxin Ma*. Programmable Aptasensor for Regulating CRISPR/Cas12a Activity . ACS Sens , 2024 Jan . doi: 10.1021/acssensors.3c01881

Wenfei Yu,Junbiao Dai, Yingxin Ma.Recent development on DNA & genome synthesis. Current Opinion in Systems Biology, 2023 Nov.doi:10.1016/j.coisb.2023.100490

Shuangying Jiang#, Zhouqing Luo#, Jie Wu, Kang Yu, Shijun Zhao, Zelin Cai, Wenfei Yu, Hui Wang, Li Cheng, Zhenzhen Liang, Hui Gao, Marco Monti, Daniel Schindler, Linsen Huang, Cheng Zeng, Weimin Zhang, Chun Zhou, Yuanwei Tang, Tianyi Li, Yingxin Ma, Yizhi Cai, Jef D Boeke, Qiao Zhao, Junbiao Dai.Building a eukaryotic chromosome arm by de novo design and synthesis. Nat Commun, 2023 Nov.doi:10.1038/s41467-023-43531-5

Shijie Cao, Leyao Li, Hongwei An, Guobin Mao, Junbiao Dai, Yingxin Ma.Development of dual-mode ELISA based on ALP-catalyzed APP hydrolysis for IL-6 detection. J Pharm Biomed Anal, 2023 Nov.doi:10.1016/j.jpba.2023.115754

Daniel Schindler, Roy S K Walker, Shuangying Jiang, Aaron N Brooks, Yun Wang, Carolin A Müller, Charlotte Cockram, Yisha Luo, Alicia García, Daniel Schraivogel, Julien Mozziconacci, Noah Pena, Mahdi Assari, María Del Carmen Sánchez Olmos, Yu Zhao, Alba Ballerini, Benjamin A Blount, Jitong Cai, Lois Ogunlana, Wei Liu, Katarina Jönsson, Dariusz Abramczyk, Eva Garcia-Ruiz, Tomasz W Turowski, Reem Swidah, Tom Ellis, Tao Pan, Francisco Antequera, Yue Shen, Conrad A Nieduszynski, Romain Koszul, Junbiao Dai, Lars M Steinmetz, Jef D Boeke, Yizhi Cai.Design, construction, and functional characterization of a tRNA neochromosome in yeast. Cell, 2023 Nov.doi:10.1016/j.cell.2023.10.015

Junbiao Dai, Huanming Yang, Isak S Pretorius, Patrick Cai, Chantal Yue Shen, Matthew Chang, Yingjin Yuan.A spotlight on global collaboration in the Sc2.0 yeast consortium. Cell Genom, 2023 Nov 9.doi:10.1016/j.xgen.2023.100441

Jee Loon Foo, Shohei Kitano, Adelia Vicanatalita Susanto, Zhu Jin, Yicong Lin, Zhouqing Luo, Linsen Huang, Zhenzhen Liang, Leslie A Mitchell, Kun Yang, Adison Wong, Yizhi Cai, Jitong Cai, Giovanni Stracquadanio, Joel S Bader, Jef D Boeke, Junbiao Dai, Matthew Wook Chang.Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration. Cell Genom, 2023 Nov 9.doi:10.1016/j.xgen.2023.100435

Yue Shen, Feng Gao, Yun Wang, Yuerong Wang, Ju Zheng, Jianhui Gong, Jintao Zhang, Zhouqing Luo, Daniel Schindler, Yang Deng, Weichao Ding, Tao Lin, Reem Swidah, Hongcui Zhao, Shuangying Jiang, Cheng Zeng, Shihong Chen, Tai Chen, Yong Wang, Yisha Luo, Leslie Mitchell, Joel S Bader, Guojie Zhang, Xia Shen, Jian Wang, Xian Fu, Junbiao Dai, Jef D Boeke, Huanming Yang, Xun Xu, Yizhi Cai.Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. Cell Genom, 2023 Nov 9.doi:10.1016/j.xgen.2023.100364

Weimin Zhang, Luciana Lazar-Stefanita, Hitoyoshi Yamashita, Michael J Shen, Leslie A Mitchell, Hikaru Kurasawa, Evgenii Lobzaev, Viola Fanfani, Max A B Haase, Xiaoji Sun, Qingwen Jiang, Gregory W Goldberg, David M Ichikawa, Stephanie L Lauer, Laura H McCulloch, Nicole Easo, S Jiaming Lin, Brendan R Camellato, Yinan Zhu, Jitong Cai, Zhuwei Xu, Yu Zhao, Maya Sacasa; Build-A-Genome Class; Marcus B Noyes, Joel S Bader, Samuel Deutsch, Giovanni Stracquadanio, Yasunori Aizawa, Junbiao Dai, Jef D Boeke.Manipulating the 3D organization of the largest synthetic yeast chromosome. Mol Cell, 2023 Nov 8.doi:10.1016/j.molcel.2023.10.015

Xiangxiang Wang, Yuyu Zhao, Zhaohua Hou, Xiaoxu Chen, Shuangying Jiang, Wei Liu, Xin Hu, Junbiao Dai, Guanghou Zhao.Large-scale pathway reconstruction and colorimetric screening accelerate cellular metabolism engineering. Metab Eng, 2023 Nov.doi:10.1016/j.ymben.2023.09.009

Guobin Mao, Chunmin Qiu, Xing Luo, Yingqi Liang, Liqing Zhao, Weiren Huang, Junbiao Dai, Yingxin Ma.Synergistic effect-triggered fluorescence quenching enables rapid and sensitive detection of alkaline phosphatase. Anal Chim Acta, 2023 Sep 1.doi:10.1016/j.aca.2023.341510

Xian-En Zhang, Chenli Liu, Junbiao Dai, Yingjin Yuan, Caixia Gao, Yan Feng, Bian Wu, Ping Wei, Chun You, Xiaowo Wang, Tong Si.Enabling technology and core theory of synthetic biology. Sci China Life Sci, 2023 Aug.doi:10.1007/s11427-022-2214-2

Guobin Mao, Xing Luo, Silu Ye, Xun Wang, Jin He, Jilie Kong, Junbiao Dai, Wen Yin, Yingxin Ma.Fluorescence and Colorimetric Analysis of African Swine Fever Virus Based on the RPA-Assisted CRISPR/Cas12a Strategy. Anal Chem, 2023 May.doi:10.1021/acs.analchem

Abdur Rasool, Qingshan Jiang, Yang Wang, Xiaoluo Huang, Qiang Qu, Junbiao Dai.Evolutionary approach to construct robust codes for DNA-based data storage. Front Genet, 2023 Mar.doi:10.3389/fgene.2023.1158337

Stefan A Hoffmann, James Diggans, Douglas Densmore,Junbiao Dai, Tom Knight, Emily Leproust, Jef D Boeke, Nicole Wheeler, Yizhi Cai.Safety by design: Biosafety and biosecurity in the age of synthetic genomics. iScience, 2023 Feb 1.doi:10.1016/j.isci.2023.106165

Mingwei Lu, Yang Wang, Wei Qiang, Junting Cui, Yu Wang, Xiaoluo Huang*,Junbiao Dai*.Towards high-density storage of text and images into DNA by the “Xiao-Pang” codec system.SCIENCE CHINA-Life Sciences, 2023-1-16. doi: 10.1007/s11427-022-2252-0.

Ling Huang, Jun Ni*, Chao Zhong, Ping Xu,Junbiao Dai, Hongzhi Tang*.Establishment of a salt-induced bioremediation platform from marine Vibrio natriegens.Communications Biology, 2022-12-9, 5(1): 1-9. DOI: 10.1038/s42003-022-04319-3. 

Siqi Huang#, Weishan Yang#, Silu Ye, Shijie Cao, Yifang Li, Zhaoying Wei, Ka Yan Ngai,Junbiao Dai, Guobin Mao*, Yingxin Ma*.Fluorescence recovery based on synergetic effect for ALP detection.Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2022, 280: 121550.doi: 10.1016/j.saa.2022.121550.

Li Cheng#, Xuetong Yue#, Zhaoyu Qin#, Xiaogang Sun, Fuchu He*,Junbiao Dai*, Chen Ding*.GwAAP: A genome-wide amino acid coding-decoding quantitative proteomics system.iScience, 2022-11-2, 25(12):105471. DOI: 10.1016/j.isci.2022.105471.

Guobin Mao#, Yifang Li#, Guoqiang Wu, Silu Ye, Shijie Cao, Wei Zhao, Junnan Lu,Junbiao Dai, Yingxin Ma*.Construction of ratiometric Si-Mn: ZnSe nanoparticles for the immunoassay of SARS-CoV-2 spike protein.Sensors and Actuators: B. Chemical, 2022, 369: 132306.doi: 10.1016/j.snb.2022.132306.

Xiaohui Kong, Kun Yan, Pujuan Deng, Haipeng Fu, Hongyao Sun, Wenze Huang, Shuangying Jiang,Junbiao Dai, Qiangfeng Cliff Zhang, Jun-jie Gogo Liu Qiaoran Xi*.LncRNA-Smad7 mediates cross-talk between Nodal/TGF-β and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells.Nucleic Acids Research, 2022-10-14, 50(18):10526-10543.

Guobin Mao#, Silu Ye#, Wen Yin, Yang Yang, Xinghu Ji, Jin He, Yingxia Liu,Junbiao Dai, Zhike He*, Yingxin Ma*.Ratiometric Fluorescent Si-FITC Nanoprobe for Immunoassay of SARS-CoV-2 Nucleocapsid Protein.Nano Research, 2022, 1-7. 

Guobin Mao#, Yang Yang#, Shijie Cao#, Silu Ye, Yifang Li, Wei Zhao, Hongwei An, Yingxia Liu*,Junbiao Dai, Yingxin Ma*.Ratiometric fluorescence immunoassay of SARS-CoV-2 nucleocapsid protein via Si-FITC nanoprobe-based inner filter effect.Nano Research, 2022, 1-8. doi: 10.1007/s12274-022-4740-5.

Xiaolong Feng#, Xiaofan Zhang#, Shuangying Jiang, Yuanwei Tang, Chao Cheng, Parthasarathy Abinand Krishna, Xiaoting Wang,Junbiao Dai, Dan Zhao*, Tian Xia*, Jianyang Zeng*.A DNA-based non-infectious replicon system to study SARS-CoV-2 RNA synthesis.Computational and Structural Biotechnology Joural, 2022.doi: 10.1016/j.csbj.2022.08.044.

Zhenzhen Liang#, Zhouqing Luo#*, Weimin Zhang#, Kang Yu, Hui Wang, Binan Geng, Qing Yang, Zuoyu N, Cheng Zeng, Yihui Zheng, Chunyuan Li, Shihui Yang, Yingxin Ma,Junbiao Dai*.Synthetic refactor of essential genes decodes functionally constrained sequences in yeast genome.iScience, 2022, 25(9): 104982. doi: 10.1016/j.isci.2022.104982.

Yingxin Ma #, Guobin Mao #, Weishan Yang #, Guoqiang Wu, Guoqiang Li, Xiaoying Li, Xin Lin, Junnan Lu, Shijun Zhao, Wei Zhao,Junbiao Dai*, Xian-En Zhang*.Studying bona fide SARS-CoV-2 biology in a BSL-2 biosafety environment using a split-virus-genome system.Science CHINA-Life Science,2022, 1-4. doi: 10.1007/s11427-022-2114-8

Lige Zhang, Huan Liu,Junbiao Dai, Ping Xu, Hongzhi Tang*.Unveiling degradation mechanism of PAHs by a Sphingobium strain from a microbial consortium.mLife, 2022-7-25, 1(3): 287-302.

Xin Hu#, Shuangying Jiang#, Feifei Xu#, Cheng Zeng, Xiangxiang Wang, Wei Liu, Aimin Cheng, Chengying Ma, Ning Gao, Yuyu Zhao,Junbiao Dai*and Guanghou Zhao*.Engineering and functional analysis of yeast with a monotypic 40S ribosome subunit.PNAS, 2022, 119(6): e2114445119.doi: 10.1073/pnas.2114445119.

Shuangying Jiang#，Yuanwei Tang#, Liang Xiang, Xinlu Zhu, Zelin Cai, Ling Li, Yingxi Chen, Peishuang Chen, Yuge Feng, Xin Lin, Guoqiang Li, Jafar Sharif，Junbiao Dai*. Efficient de novo assembly and modification of large DNA fragments.Science CHINA-Life Science,2021, 1-11, https://doi.org/10.1007/s11427-021-2029-0

Junyang Ong#, Reem Swidah#, Macro Monti, Daniel Schindler,Junbiao Dai, Yizhi Cai*.SCRaMbLE: A study of Its Robustness and Challenges through Enhancement of Hygromycin B Resistance in a Semi-Synthetic Yeast.Bioengineering. 2021, 8(3):42. https://doi.org/10.3390/bioengineering8030042.

Min Li#, Jiashu Wu#,Junbiao Dai, Qingshan Jiang, Qiang Qu, Xiaoluo Huang, Yang Wang*.A self‑contained and self‑explanatory DNA storage system.Scientific Reports, 2021 (11):18063. https://doi.org/10.1038/s41598-021-97570-3.

Chongyang Ren#, Yong Liu#, Wenping Wei,Junbiao Dai* and Bangce Ye*.Reconstruction of Secondary Metabolic Pathway to Synthesize Novel Metabolite in Saccharopolyspora erythraea.Frontiers in Bioengineering and Biotechnology. 2021 (9): 628569. doi: 10.3389/fbioe.2021.628569

Xiangxiang Wang#, Zhiyong Yue#, Feifei Xu#, Sufang Wang, Xin Hu,Junbiao Dai*, Guanghou Zhao*.Coevolution of ribosomal RNA expansion segment 7L and assembly factor Noc2p specializes the ribosome biogenesis pathway between Saccharomyces cerevisiae and Candida albicans.Nucleic Acids Research, Volume 49, Issue 8, 7 May 2021, Pages 4655–4667, https://doi.org/10.1093/nar/gkab218

Liang Xiang,Guoqiang Li,Luan Wen,Cong Su,Yong Liu,Hongzhi Tang,Junbiao Dai*.Biodegradation of aromatic pollutants meets synthetic biology.Synth Syst Biotechnol .2021 Jul 1; 6(3):153- 162.doi:10.1016/j.synbio.2021.06.001.

Zhouqing Luo*#, Kang Yu#, Shangqian Xie, Marco Monti, Daniel Schindler, Yuan Fang, Shijun Zhao, Zhenzhen Liang, Shuangying Jiang, Meiwei Luan, Chuanle Xiao, Yizhi Cai* andJunbiao Dai*.Compacting a synthetic yeast chromosome arm.Genome Biology, 2021,22:5. doi.org/10.1186/s13059-020-02232-8

Hannes Braberg#, Ignacia Echeverria#, Stefan Bohn#, Peter Cimermancic#, Anthony Shiver, Richard Alexander, Jiewei Xu, Michael Shales, Raghuvar Dronamraju, Shuangying Jiang, Gajendradhar Dwivedi, Derek Bogdanoff, Kaitlin K. Chaung, Ruth Hüttenhain, Shuyi Wang, David Mavor, Riccardo Pellarin, Dina Schneidman, Joel S. Bader, James S. Fraser, John Morris, James E. Haber, Brian D. Strahl, Carol A. Gross,Junbiao Dai, Jef D. Boeke∗, Andrej Sali∗, Nevan J. Krogan∗.Genetic interaction mapping informs integrative structure determination of protein complexes.Science, 2020,370, eaaz4910 (2020). DOI: 10.1126/science.aaz4910

Reem Swidah, Jamie Auxillos, Wei Liu, Sally Jones, Ting-Fung Chan,Junbiao Dai, and Yizhi Cai.SCRaMbLE-in: A Fast and Efficient Method to Diversify and Improve the Yields of Heterologous Pathways in Synthetic Yeast.Methods in Molecular Biology, 2020;2205:305-327. doi: 10.1007/978-1-0716-0908-8_17

Matthew J. MacKay, Anna C. Hooker, Ebrahim Afshinnekoo, Marc Salit, Jason Kelly, Jonathan V. Feldstein, Nick Haft, Doug Schenkel, Subhalaxmi Nambi, Yizhi Cai, Feng Zhang, George Church,Junbiao Dai, Cliff L. Wang, Shawn Levy, Jeff Huber, Hanlee P. Ji, Alison Kriegel, Anne L. Wyllie, Christopher E. Mason.The COVID-19 XPRIZE and the need for scalable, fast, and widespread testing.Nature Biotechnology, 2020, 38(9):1021-1024. doi: 10.1038/s41587-020-0655-4.

Zhouqing Luo, Shuangying Jiang, andJunbiao Dai. Chromosomal Rearrangements of Synthetic Yeast by SCRaMbLE.Methods in Molecular Biology, 2021;2196:153-165. doi: 10.1007/978-1-0716-0868-5_12

Shuangying Jiang, Zhouqing Luo, andJunbiao Dai.Use YeastFab to Construct Genetic Parts and Multicomponent Pathways for Metabolic Engineering.Methods in Molecular Biology,2021;2196:167-180. doi: 10.1007/978-1-0716-0868-5_13.

Yang Li#, Dan-yun Lai#, Hai-nan Zhang#, He-wei Jiang#, Xiaolong Tian#, Ming-liang Ma, Huan Qi, Qing-feng Meng, Shu-juan Guo,Yanling Wu, Wei Wang, Xiao Yang, Da-wei Shi,Jun-biao Dai, Tianlei Ying*, Jie Zhou* and Sheng-ce Tao*.Linear epitopes of SARS-CoV-2 spike protein elicit neutralizing antibodies in COVID-19 patients.Cellular&Molecular Immunology,2020, 17(10):1095-1097. doi: 10.1038/s41423-020-00523-5. 

Shuangying Jiang, Shijun Zhao, Zelin Cai, Yuanwei Tang,Junbiao Dai*.Synthetic yeast genomes for studying chromosomal features.Current Opinion in Systems Biology. 2020, 23: 1-7.

Junbiao Dai∗, Jef D. Boeke, Zhouqing Luo, Shuangying Jiang, Yizhi Cai∗,Sc3.0: revamping and minimizing the yeast genome.Genome Biology.2020.21:205. doi: 10.1186/s13059-020-02130-z

Jiaying Zhang, Junjie Luo, Jieyan Chen,Junbiao Dai*, Craig Montell*.The Role of Y Chomosome Genes in Male Fertility in Drosophila melanogaster.Genetics. 2020, 215: 623-633.

Zhongyi Lu#, Ting Fu#, Tianyi Li, Yang Liu, Siyu Zhang, Jinquan Li,Junbiao Dai, Eugene V.Koonin, Guohui Li, Huiying Chu*, Meng Li*.Coevolution of Eukaryote-like Vps4 and ESCPT-III Subunits in the Asgard Archaea.mBio, 2020, 11(3): 300417-20.

Zhouqing Luo, Stefan A. Hoffmann, Shuangying Jiang, Yizhi Cai∗,Junbiao Dai∗.Probing eukaryotic genome functions with synthetic chromosomes, Experimental Cell Research,2020, 390(1):111936. doi: 10.1016/j.yexcr.2020. 111936.

Weimin Zhang#, Xuedi Zhang#, Zhaoyu Xue#, Yijie Li#, Qing Ma, Xiangle Ren, Jiaying Zhang, Songhua Yang, Lijuan Yang, Menghua Wu, Mengda Ren, Rongwen Xi, Zheng Wu, Ji-Long Liu, Erika Matunis,Junbiao Dai*, Guanjun Gao*,Probing the function of metazoan histones with a systematic library of H3 and H4 mutants,Developmental Cell, 2019, 48: 1-14. doi: 10.1016/j.devcel.2018.11.047.

Jamie Y. Auxilos, Eva Garcia-Ruiz, Sally Jones, Tianyi Li, Shuangying Jiang,Junbiao Dai, Yizhi Cai*.Multiplex Genome Engineering for Optimizing Bioproduction in Saccharomyces cerevisiae.Biochenmistry. 2019, 58: 1492-1500.

Junbiao Dai*.Investigating loss of heterozygosity in a SCRaMbLEd yeast genome.Science CHINA-Life Science, 2019. doi: 10.1007/s11427-019-9517-5

Shuangying Jiang, Tongsi,Junbiao Dai*.Whole-Genome Regulation for Yeast Metabolic Engineering，Small methods,2019, 1900640.

Yicong Lin#, Xinzhi Zou#, Yihui Zheng, Yizhi Cai*,Junbiao Dai*.Improving Chromosome Synthesis with a Semiquantitative Phenotypic Assay and Refined Assembly Strategy.ACS Synthetic Biology, 2019. doi: 10.1021/acssynbio.8b00505.

Qingwen Jiang, Weinmin Zhang, Chenghao Liu, Yicong Lin, Qingyu Wu, Junbiao Dai*,Dissecting PCNA function with a systematically designed mutant library in yeast, Journal of Genetics and Genomics, 2019, 26: 301-313. doi: 10.1016/j.jgg.2019.03.014.

Shuangying Jiang, Junbiao Dai*,Inevitability or contingency: how many chromosomes do we really need?, SCIENCE CHINA-Life Sciences, 2018, 1-4.  DOI: 10.1007/s11427-018-9425-8

Zhouqing Luo, Qing Yang, Binan Geng, Shuangying Jiang, Shihui Yang, Xiaozheng Li, Yizhi Cai, Junbiao Dai*, Whole genome engineering by synthesis, SCIENCE CHINA-Life Sciences, 2018, 1-13.  doi:10.1007/s11427-018-9403-y.

Weimin Zhang#, Xuedi Zhang#, Zhaoyu Xue#, Yijie Li#, Qing Ma, Xiangle Ren, Jiaying Zhang, Songhua Yang, Lijuan Yang, Menghua Wu, Mengda Ren, Rongwen Xi, Zheng Wu, Ji-Long Liu, Erika Matunis,Junbiao Dai*, Guanjun Gao*, Probing the function of metazoan histones with a systematic library of H3 and H4 mutants, Developmental Cell, 2019, 48, 1-14.  doi: 10.1016/j.devcel.2018.11.047.

Yibo Xiao, Xi He, Qi Ma, Yue Lu, Fan Bai,Junbiao Dai*, Qingyu Wu*, Photosynthetic Accumulation of Lutein inAuxenochlorella protothecoidesafter Heterotrophic Growth, Marine drugs, 2018, 16(8).  doi:10.3390/md16080283

Li Cheng, Chengxi Liu, Shuangying Jiang, Sha Hou, Jinguo Huang, Ziqing Chen, Yangyang Sun, Huan Qi, Hewei Jiang, Jingfang Wang, Yiming Zhou, Daniel M Czajkowsky,Junbiao Dai*, Shengce Tao*,Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks, Molecular & Cellular Proteomics, 2018.  doi:10.1074/mcp.RA117.000550.

Tianyi Li#, Xiuqi Chen#, Yizhi Cai*,Junbiao Dai*,Artificial Protein Scaffold System (AProSS): An efficient method to optimize exogenous metabolic pathways inSaccharomyces cerevisiae,Metabolic Engineering, 2018, 49: 13-20.  doi: 10.1016/j.ymben.2018.07.006.

Yan Liu, Fan Yang, Siying Li,Junbiao Dai*, Haiteng Deng*,Glutaredoxin deletion shortens chronological life span in Saccharomyces cerevisiae via ROS mediated Ras/PKA activation,Journal of Proteome Research., 2018. doi: 10.1021/acs.jproteome.8b00012.

Wei Liu, Zhouqing Luo, Yun Wang, Nhan Pham, Laura Tuck, Irene Pérez Pi, Longying Liu, Yue Shen, Chris French, Manfred Auer, Jon Marles-Wright,Junbiao Dai*, Yizhi Cai*,Rapid pathwayprototyping andengineering usingin vitroandin vivosynthetic genome SCRaMbLE-in methods,Nature Communications, 2018, 9: 1936. doi:10.1038/s41467-018-04254-0

Zhouqing Luo#, Lihui Wang#, Yun Wang, Weimin Zhang, Yakun Guo, Yue Shen, Linghuo Jiang, Qingyu Wu, Chong Zhang, Yizhi Cai*,Junbiao Dai*,Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES,Nature Communications, 2018, 9,1930. doi:10.1038/s41467-017-00806-y

Daniel Schindler, Junbiao Dai, Yizhi Cai*, Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions, Current Opinion in Chemical Biology,2018,8;46:56-62. doi: 10.1016/j.cbpa.2018.04.002. [Epub ahead of print]

Yikang Zhou#, Gang Li#, Junkai Dong#, Xin-hui Xing,Junbiao Dai*, Chong Zhang*,MiYA, an efficient machine-learning workflow in conjunction with the YeastFab assembly strategy for combinatorial optimization of heterologous metabolic pathways inSaccharomyces cerevisiae,Metabolic Engineering,2018, pii: S1096-7176(18)30014-4. doi: 10.1016/j.ymben.2018.03.020. [Epub ahead of print]

Sha Hou, Qin Qin,Junbiao Dai*,Wicket: a versatile tool for the integration and optimization of exogenous pathway inSaccharomyces cerevisiae,ACS Synthetic Biology, 2018, 7(3):782-788. doi: 10.1021/acssynbio.7b00391. Epub 2018 Feb 28.

He Huang#, Zhouqing Luo#, Shankang Qi#, Jing Huang#, Peng Xu, Xiuxuan Wang, Li Gao, Fangyi Li, Jian Wang, Zhucheng Chen, Lunzhi Dai*, Junbiao Dai*, Yingming Zhao*,Landscape of the Regulatory Elements for Lysine 2-Hydroxyisobutyrylation Pathway, Cell Research, 2018, 28(1):111-125. doi: 10.1038/cr.2017.149.