Zhu J.#*, Chu P.#, Fu X.* (2024)  Understanding the development of bacterial colony: physiology, new technology and modeling.Quantitative Biology (In Press)

Li S.#, Ma Z.#, Yu Y.#, Wang J., Shen Y., Cui X., Fu X., Huang S.* (2024) Coma pattern-based autofocusing unlocks superior performance in unravelling single-cell dynamics during bacterial cold shock response. BioRXiv: https://doi.org/10.1101/2024.10.15.618375

Wen L.#, Bai Y.#, Lan Y., Shen Y., She X., Dong P., Wang T., Fu X.*, Huang S.* (2024) Strong segregation promotes self-destructive cooperation. BioRXiv: https://doi.org/10.1101/2024.10.15.618393

Yuan H.#,Bai Y.*,Fu X.*(2024)A global resource constrained model to predict metabolic flux dynamics in fluctuating environments. BIORXIV/2024/617971

Chu P#, Zhu J#, Ma Z, Fu X*.(2024) Colony pattern development of a synthetic bistable switch. BioRxiv. https://doi.org/10.1101/2024.06.17.599191

Zhang Y.#, Hu Q., Su Y., Chu P. , Wei T. , He C. , Yu P., Liu C., Fu X.* (2024) Navigated range expansion promotes migratory culling.PNAS (In Press)

Li Y., Fu X., Zhang X. (2024) A Brief Overview of Synthetic Biology. China Biotechnology, 44(1): 52-60.

Yuan H.#,Bai Y.#*,Li X, Fu X.*(2024) Cross-regulation between proteome reallocation and metabolic flux redistribution governs bacterial growth transition kinetics. Metabolic Engineering, 82, 60-68.

Zhu J.#, Chu P.#, Fu X.*, (2023) Unbalanced response to growth variations reshapes the cell fate decision landscape. Nature Chemical Biology 19, 1097–1104

Luo L.#*, Bai Y.#, Fu X*. (2023) Stochastic threshold in cell size control. Physical Review Research. 5,1 10.1103‬/PhysRevResearch.‪5.013173‬

Wei T.#, Lai W.#, Chen Q.#, Zhang Y.#, Sun C., He X., Zhao G., Fu X.*, Liu C.* (2022) Exploiting spatial dimensions to enable parallelized continuous directed evolution. Molecular Systems Biology 18:e10934

Li Y., Fu X., Du L.. (2022) Regulating the commercialization of cell-cultured meat: practices in selected jurisdictions and their implications for China. Synthetic Biology Journal. 3(1): 209-223

Chu Y.#, Guo C.#, Cui D., Fu. X, Ma Y*. (2022) DeephageTP: a convolutional neural network framework for identifying phage-specific proteins from metagenomic sequencing data. PeerJ 10(17):e13404

Bai Y.#, He C.#, Chu P. , Long J., Li X., Fu X.* (2021) Spatial modulation of individual behaviors enables an ordered structure of diverse phenotypes during bacterial group migration. eLife 2021;10:e67316 

Liu W., Tokuyasu, A. T., Fu X.*, Liu C.* (2021) The spatial organization of microbial communities during range expansion, Current Opinion in Microbiology, 63, 109-116.

Luo L.#*, Bai Y.#, Fu X. (2021) Master equation approach to the stochastic accumulation dynamics of bacterial cell cycle. New J. Phys. 23 083029 https://doi.org/10.1088/1367-2630/ac1976

Chu P., Zhu J., Huang W., Liu C., Fu X.* (2021) Host-circuit coupling: toward a new framework for genetic circuit design. Synthetic Biology Journal. 2, 1: 91-105.

Ma W., Wei T., Fu X.*, Li X.* (2021) Quantitative engineering biology in the tumor. Chinese Science Bulletin, 66 , 3 : 319-328

Su Y.#, Bai Y., Qi F., Zhang Y., Fu X.* (2021) Spatiotemporal dynamics of bacterial collective migration. Chinese Science Bulletin, 66 , 3 : 264-272

Xiang Y.#, Wen H., Yu Y., Li M., Fu X., Huang, S.*, (2020) Gut-on-chip: Recreating human intestine in vitro. Journal of Tissue Engineering, 10.1177/2041731420965318

Zheng H.#, Bai Y.#, Jiang M.#, Tokuyasu T., Huang X., Zhong F., Wu Y., Fu X., Kleckner N., Hwa T., Liu C*. (2020) General quantitative relations linking cell growth and the cell cycle in Escherichia coli. Nature Microbiology, 5, 995–1001 

Ma Z.^#, Chu P.^#, Su Y.^#, Yu Y., Wen H., Fu X., Huang S*. (2019) Applications of single-cell technology on bacterial analysis. Quantitative Biology, 7, 3

Hillson N., Caddick M., Cai Y.,Carrasco J., Chang M., Curach N., Bell D., Feuvre R., Friedman D., Fu X., Gold N., HerrgårdM., HolowkoM., Johnson J., Johnson R., Keasling J.D.,Kitney R., Kondo A., Liu C., Martin V.,Menolascina F.,Ogino C., Patron N.J., Pavan M.,Poh C., Pretorius I. S.,  Rosser S. J.,  Scrutton N. S., Storch M., Tekotte H., Travnik E., Vickers C. E., Yew W. S., YuanY., Zhao H., Freemont P. S. (2019) Building a global alliance of biofoundries. Nature Communications 10 2040.

Chen L., Guan G., Liu Q., Yuan S., Yan T., Tian L., Zhou Y., Zhao Y., Ma Y., Wei T.*, Fu X.*.(2019) Characterization and complete genomic analysis of two Salmonella phages, SenALZ1 and SenASZ3, new members of the genus Cba120virus. Archives of Virology. https://doi.org/10.1007/s00705-019-04183-3.

Cui J., Zhang B., Ma Y., Fu X., Wang M., Liu C..(2018) Engineering Platforms for Synthetic Biology Research. Bulletin of the Chinese Academy of Sciences 33(11):1249-1257.

Fu X.^#, Kato  S.^#, Long J., Mattingly H. H., He C., Vural D. C., Zucker S. W., Emonet T. (2018) Spatial self-organization resolves conflicts between individuality and collective migration. Nature Communications  9, 2177 Download

Bai Y., Gao M., Wen L., He C., Chen Y., Liu C., Fu X.^*, Huang S.^* (2017) Applications of Microfluidics in Quantitative Biology. Biotechnology Journal.Download

Liu L., Bai Y., Zheng H., Fu X.^*, Liu C.^* (2017) Fundamental aspects of synthetic biology. Chinese Journal of Biotechnology (Chinese) .
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Wang X., Liu C., Fu X., Huang J. (2015) Synthetic Biology: a New Means of Biological Pattern Formation Study. SCIENTIA SINICA Vitae (Chinese)Download

Dufour Y.^#, Fu X.^#, Hernandez-Nunez L., Emonet T. (2014) Limits of Feedback Control in Bacterial Chemotaxis. PLoS Computational Biology

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Fu X., Huang W. (2014) Quantitative measurement and analysis in a synthetic pattern formation multicellular system. Methods in Molecular Biology
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Liu C., Fu X., Huang J. D.^* (2013) Synthetic biology: a new approach to study biological pattern formation. Quantitative Biology, 1, 7.Download

Fu X., Tang L., Liu C., Huang J., Hwa T., Lenz P. (2012) Stripe formation in bacterial systems with density-suppressed motility. Physical Review LettersDownload

Liu C.^#, Fu X.^#, Liu L., Ren X., Chau C. K., Li S., Xiang L., Zeng H., Chen G., Tang L. H., Lenz P., Cui X., Huang W.^*, Hwa T.^*, Huang J. D.^* (2011) Sequential establishment of stripe patterns in an expanding cell population. Science 334, 238-241.Download