Ran Li^*, Yongming Wang^*, Han Hu, Yan Tan, Yingfei Ma. Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. Nat Commun (2022). 

Peifen Chen^*, Ziqiang Liu^*, Xin Tan^*, Haijiang Wang, Yiyang Liang, Yingjun Kong, Wenxue Sun, Liqin Sun, Yingfei Ma^#, Hongzhou Lu^#. Bacteriophage therapy for empyema caused by carbapenem-resistant Pseudomonas aeruginosa. Bioscience Trends (2022).

Shengjian Yuan, Juan Shi,Jianrong Jiang, Yingfei Ma. Genome-scale top-down reduction of phages to generate viable minimal phage genomes. Nucleic Acids Research (2022).

Shun Guo, Haoran Zhang, Yunmeng Chu, Qingshan Jiang^#, Yingfei Ma^#. A neural network-based framework to understand the Type 2 Diabetes (T2D)-related alteration of the human gut microbiome. iMeta (2022).

Yunmeng Chu^*, Shun Guo^*, Dachao Cui, Xiongfei Fu, Yingfei Ma. DeephageTP: A Convolutional Neural Network Framework for Identifying Phage-specific Proteins from metagenomic sequencing data. PeerJ (2022).