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Ling Chen, Quan Liu, Jiqiang Fan, Tingwei Yan, Haoran Zhang, Jinfang Yang, Deng Deng, Chaolan Liu, Ting Wei*, and Yingfei Ma*, Characterization and genomic analysis of ValSw3-3, a new Siphoviridae bacteriophage infecting Vibrio alginolyticus, 2020, Journal of Virology (accepted)


Ling Chen#, Jiqiang Fan#, Tingwei Yan, Quan Liu, Shengjian Yuan, Haoran Zhang, Jinfang Yang, Deng Deng, Shuqiang Huang* and Yingfei Ma*, Isolation and Characterization of Specific Phages to Prepare a Cocktail Preventing Vibrio sp. Va-F3 Infections in Shrimp (Litopenaeus vannamei), 2019, Front. Microbiol., 11 October 2019,

Guoqin Mai, Limei Chen, Ran Li, Quan Liu, Haoran Zhang, and Yingfei Ma, 2019. Common Core Bacterial Biomarkers of Bladder Cancer Based on Multiple Datasets, BioMed Research International, vol. 2019, Article ID 4824909, 8 pages,

L. Chen, G. Guan, Q. Liu, S. Yuan, T. Yan, L. Tian, Y. Zhou, Y. Zhao, Y. Ma, T. Wei, X. Fu. 2019. Characterization and complete genomic analysis of two Salmonella phages, SenALZ1 and SenASZ3, new members of the genus Cba120virusArchives of Virology

Jinming Cui#, Guoqin Mai#, Zuowei Wang, Quan Liu, Yan Zhou,Yingfei Ma* and Chenli Liu*, 2019. Metagenomic insights into a cellulose-rich niche reveal microbial cooperation in cellulose degradation. Front. Microbiol.28 March


Ling Chen, Shengjian Yuan, Quan Liu, Guoqing Mai, Jinfang Yang, Deng Deng, Bingzhao Zhang, Chenli Liu and Yingfei Ma*. In vitro design and evaluation of phage cocktails against Aeromonas salmonicida. Front. Microbiol. 2018

S. Yuan, L. Chen, Q. Liu, Y. Zhou, J. Yang, D. Deng, H. Li, and Y. Ma*, Characterization and genomic analyses of Aeromonas hydrophila phages AhSzq-1 and AhSzw-1, isolates representing new species within the T5virus genus. Archives of virology 163 (2018) 1985-1988

 Y. Ma*, X. You, G. Mai, T. Tokuyasu, and C. Liu*, A human gut phage catalog correlates the gut phageome with type 2 diabetes. Microbiome 6 (2018) 24.

Jiang MZ, Qiu ZJ, Zhang GW, Gao SY, You XY*, Ma YF*Mucilaginibacter xinganensis sp. nov., a phenanthrene-degrading bacterium isolated from wetland soil. Antonie Van Leeuwenhoek 2018.

Zhenlong Yang#, Shengjian Yuan#, Ling Chen, Quan Liu, Haoran Zhang, Yingfei Ma, Ting Wei*, Shuqiang Huang*. Complete genome analysis of bacteriophage AsXd-1, a new member of the genus Hk97virus, family Siphoviridae. Archives of Virology. 2018. 

Jiqiang Fan#, Limei Chen#, Guoqin Mai, Haoran Zhang, Jinfang Yang, Deng Deng, Yingfei Ma*. 2018. Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight. Scientific Reports 9:734


J. Cui, M. Xiao, M. Liu, Z. Wang, F. Liu, L. Guo, H. Meng, H. Zhang, J. Yang, D. Deng, S. Huang, Y. Ma*, and C. Liu*, Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture. Journal of applied microbiology 123 (2017) 1274-1285.


Sun, Y.#, Ma, Y.#, Lin, P., Tang, Y., Yang, L., Shen, Y., Zhang, R., Liu, L.,  Cheng,  J., Shao, J., Qi, T., Tang, Y., Cai, R., Guan, L., Luo, B., Sun, M.,  Li, B., Pei, Z.*, and Lu, H. 2016. Fecal bacterial microbiome diversity in chronic HIV-infected patients in China.  Emerging Microbes & Infections.


Yang, L., Poles, M., Fisch, G., Ma, Y., Nossa, C., Norman, R., Phelan, J., Pei,  Z.*, 2015. Loss of colonization resistance in the proximal gut in HIV infection. AIDS.

Ren, W., Ma, Y., Yang, L., Gettie, A., Salas, J., Russell, K., Blanchard, J., Davidow, A., Pei, Z., Chang, T., Cheng-Mayer, C., 2015 Fast disease progression in SHIV infected female macaques is accompanied by a robust local inflammatory innate immune and microbial response. AIDS. 29:F1-8.

Ma, Y., Allen, L.Z., Palenik, B., 2014a. Diversity and genome dynamics of marine cyanophages using metagenomic analyses. Environ Microbiol Rep. 6 (6), 583-94.

Ma, Y., Madupu, R., Karaoz, U., Nossa, C.W., Yang, L., Yooseph, S., Yachimski, P.S., Brodie, E.L., Nelson, K.E., Pei, Z., 2014b. Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets. J Virol .88 (9), 4786-97.

Ma, Y., Paulsen, I.T., Palenik, B., 2012. Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments. Environ Microbiol. 14 (2), 453-66.

Liu, L., Wu, J.F., Ma, Y.F., Wang, S.Y., Zhao, G.P.*, Liu, S.J.*, 2007b. A novel deaminase involved in chloronitrobenzene and nitrobenzene degradation with comamonas sp. Strain cnb-1. J Bacteriol 189 (7), 2677-82.

Liu, C., Wu, Y., Li, L., Ma, Y., Shao, Z.*, 2007a. Thalassospira xiamenensis sp. Nov. And thalassospira profundimaris sp. Nov. Int J Syst Evol Microbiol 57 (Pt 2), 316-20.

Zhang, Y., Ma, Y.F., Qi, S.W., Meng, B., Chaudhry, M.T., Liu, S.Q., Liu, S.J. *, 2007. Responses to arsenate stress by comamonas sp. Strain cnb-1 at genetic and proteomic levels. Microbiology 153 (Pt 11), 3713-21.

Ma, Y.F., Wu, J.F., Wang, S.Y., Jiang, C.Y., Zhang, Y., Qi, S.W., Liu, L., Zhao, G.P., Liu, S.J., 2007. Nucleotide sequence of plasmid pCNB1 from Comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation. Appl Environ Microbiol .73 (14), 4477-83.

Wu, J.F., Jiang, C.Y., Wang, B.J., Ma, Y.F., Liu, Z.P., Liu, S.J.*, 2006. Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in comamonas sp. Strain cnb-1. Appl Environ Microbiol 72 (3), 1759-65.

Ma, Y., Wang, L., Shao, Z., 2006. Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from antarctic soils and the role of large plasmids in horizontal gene transfer. Environ Microbiol .8 (3), 455-65.

 Ma, Y.F., Zhang, Y., Zhang, J.Y., Chen, D.W., Zhu, Y., Zheng, H., Wang, S.Y., Jiang, C.Y., Zhao, G.P., Liu, S.J., 2009. The complete genome of comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol. 75 (21), 6812-9.




马迎飞、樊继强、王婧婷、陈玲、刘陈立, 裂性弧菌噬菌体VpaJT-1及包含该噬菌体的杀菌组合物, 201711160832.X